9/20/2023 0 Comments Checksum check![]() Enhancing discoverability of EHDEN OHDSI data with markupĦ. Depositing IMI ReSOLUTE transcriptomics datasets to EBI repositoriesĥ. Readying IMI Oncotrack - clinical cohort datasets for deposition to EBI BiosamplesĤ. IMI nd4bb - chemical activities datasetsģ. Moving to a semantically typed version - ISA-JSON-LDĭissemination - Packaging ISA as a Research Object (RO)įAIRifying Data Matrices - Step1 - Starting materialįAIRifying Data Matrices - Step2 - Structuring dataįAIRifying Data Matrices - Step3 - Exploring data with SPARQLįAIRifying Data Matrices - Step4 - Integrating dataĢ. Minimal Data Maturity with ISA - ISA-Tab and free textĮnhanced Data Maturity with ISA - ISA-JSON and ontology markup Improving dataset maturity - the MIAPPE use case Using OpenRefine and Karma for FAIRificationĬhanging culture with the Dataset Maturity Model Introducing vocabulary portals and lookup servicesĦ.2. Deploying a data catalogue - The IMI data catalogue exampleĦ.1. Introducing identifier resolution servicesĥ. unstructured text to graph as executable notebookġ. Creating knowledge graphs from unstructured textġ7.12.1. Expressing Clinical Genetic Information as FHIR JSONġ7. ![]() Surveying extraction, transformation, load (ETL) toolsġ6. Inventorying tools for converting data to RDFġ5. Validating file format - FASTQ exampleġ4. Converting from proprietary to open formatġ3. Outlining a metadata profile for Bioactivity dataġ2. Building a community compliant metadata profile - The Covid19 sample profile use caseġ1.5.3. Outlining a metadata profile for transcriptomicsġ1.5.2. Mapping Ontologies with OxO, EBI Ontology Xref Serviceġ1.5.1. Defining competency questions for the Ontology ROBOT use caseĩ. Building an application ontology for metabolomics - MSIOĨ.11.2. Building an application ontology with ROBOTĨ.11.1. Introducing ontology-related tools and servicesĨ. Requesting new terms from terminologies and ontologiesħ. Introducing terminologies and ontologiesĥ. Mapping identifiers using BridgeDb web servicesĤ. Interlinking data from different sourcesģ.11.1. Registering SwissLipids identifiers in WikidataĢ. Marking up Data Catalogue page with & Bioschemas for SEOġ. Marking up Dataset page with & Bioschemas for SEOĩ.9.3. Marking up Data pages with & Bioschemas for SEOĩ.9.2. Introducing Search Engine Optimization (SEO)ĩ.9.1. Validating checksums to verify file integrityĩ. Depositing to generic repositories - Zenodo use caseĨ. Minting identifiers with Globus Minid clientĥ. Creating InChI & SMILES identifiers for chemical structuresĤ. Introducing unique, persistent identifiersĢ. ![]() Reflecting on Practical Considerations for CROs to play FAIRĭata Protection Impact Assessment and Data Privacyġ. Raising Awareness in Public Knowledge Graphs for Life Sciences Training for FAIRification with open or synthetic biomedical datasets Understanding the relation between FAIR and Knowledge Graphs ![]()
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |